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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G203800.1 | ||||||||
Common Name | B456_009G203800, LOC105769102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 496aa MW: 51628.9 Da PI: 8.9192 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.009G203800.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.8 | 4.1e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Gorai.009G203800.1 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.17E-7 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.9E-5 | 69 | 91 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.9E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.17E-7 | 140 | 166 | No hit | No description |
SMART | SM00355 | 77 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MVELENSSAM TVSTASGEAT ASSLGNQIQD NQLTGGGPPK KKRNLPGMPD PDAEVIALSP 60 KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH 120 NPARALGDLT GIKKHFCRKH GERKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF 180 SRRDSFITHR AFCDALAEES ARTQTLGVAN PEGNINVNGN GSGNTTMVGG GAAATSPPPQ 240 PLTPSTTSVV SPGLSIQSSE VPENPMGLSP AAATTATANV FASIFAPNSQ PSKISAPSSF 300 LQATTPLERT SLSLSSPLYL SNNGSSIFTR PENDHCHYAP SPQPAMSATA LLQKAAQMGA 360 AASNPSLLRG LGLAVSSASP AGQDPNVKSE SNTATASLGL GFPSNGSSEL TNPMIGSSSL 420 FGNKPTTLDL LGLGMADGGA SSSGLSALLT SFGGGFNAGA ATATSYGAGG SNNSPIETWE 480 GGAERKHNGP ANAML* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526115 | 7e-42 | HQ526115.1 Gossypium herbaceum clone NBRI_D2_1707 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444978.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-145 | IDD1_ARATH; Protein indeterminate-domain 1 | ||||
TrEMBL | A0A0D2TSX8 | 0.0 | A0A0D2TSX8_G | ||||
STRING | POPTR_0002s26430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-126 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G203800.1 |
Entrez Gene | 105769102 |
Publications ? help Back to Top | |||
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