PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G203800.1
Common NameB456_009G203800, LOC105769102
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 496aa    MW: 51628.9 Da    PI: 8.9192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G203800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Gorai.009G203800.1 69 FVCEICNKGFQRDQNLQLHRRGH 91
                        89*******************88 PP
2zf-C2H215.84.1e-05145167123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ k H++t+
  Gorai.009G203800.1 145 WKCERCSKKYAVQSDWKAHMKTC 167
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
PfamPF121717.9E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355220110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.17E-7140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVELENSSAM TVSTASGEAT ASSLGNQIQD NQLTGGGPPK KKRNLPGMPD PDAEVIALSP  60
KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH  120
NPARALGDLT GIKKHFCRKH GERKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF  180
SRRDSFITHR AFCDALAEES ARTQTLGVAN PEGNINVNGN GSGNTTMVGG GAAATSPPPQ  240
PLTPSTTSVV SPGLSIQSSE VPENPMGLSP AAATTATANV FASIFAPNSQ PSKISAPSSF  300
LQATTPLERT SLSLSSPLYL SNNGSSIFTR PENDHCHYAP SPQPAMSATA LLQKAAQMGA  360
AASNPSLLRG LGLAVSSASP AGQDPNVKSE SNTATASLGL GFPSNGSSEL TNPMIGSSSL  420
FGNKPTTLDL LGLGMADGGA SSSGLSALLT SFGGGFNAGA ATATSYGAGG SNNSPIETWE  480
GGAERKHNGP ANAML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5261157e-42HQ526115.1 Gossypium herbaceum clone NBRI_D2_1707 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444978.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-145IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0D2TSX80.0A0A0D2TSX8_G
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-126indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]